J3_7TUT_027

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UAUAGACAGCAGGAUG*CGCUAAGGAGUG*CUCACCUGCCGAA

Length

41 nucleotides

Bulged bases

7TUT|1|K|A|1960, 7TUT|1|K|U|1971, 7TUT|1|K|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TUT|1|K|U|1957
7TUT|1|K|A|1958
7TUT|1|K|U|1959
7TUT|1|K|A|1960
7TUT|1|K|G|1961
7TUT|1|K|A|1962
7TUT|1|K|C|1963
7TUT|1|K|A|1964
7TUT|1|K|G|1965
7TUT|1|K|C|1966
7TUT|1|K|A|1967
7TUT|1|K|G|1968
7TUT|1|K|G|1969
7TUT|1|K|A|1970
7TUT|1|K|U|1971
7TUT|1|K|G|1972
*
7TUT|1|K|C|1994
7TUT|1|K|G|1995
7TUT|1|K|C|1996
7TUT|1|K|U|1997
7TUT|1|K|A|1998
7TUT|1|K|A|1999
7TUT|1|K|G|2000
7TUT|1|K|G|2001
7TUT|1|K|A|2002
7TUT|1|K|G|2003
7TUT|1|K|U|2004
7TUT|1|K|G|2005
*
7TUT|1|K|C|2014
7TUT|1|K|U|2015
7TUT|1|K|C|2016
7TUT|1|K|A|2017
7TUT|1|K|C|2018
7TUT|1|K|C|2019
7TUT|1|K|U|2020
7TUT|1|K|G|2021
7TUT|1|K|C|2022
7TUT|1|K|C|2023
7TUT|1|K|G|2024
7TUT|1|K|A|2025
7TUT|1|K|A|2026

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain m

Ubiquitin A-52 residue ribosomal protein fusion product 1