J3_7U2I_022

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2I_022 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1612

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7U2I|1|1a|C|990
7U2I|1|1a|U|991
7U2I|1|1a|U|992
7U2I|1|1a|G|993
*
7U2I|1|1a|C|1045
7U2I|1|1a|A|1046
7U2I|1|1a|G|1047
*
7U2I|1|1a|C|1210
7U2I|1|1a|U|1211
7U2I|1|1a|U|1212
7U2I|1|1a|A|1213
7U2I|1|1a|C|1214
7U2I|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z