J3_7U2I_058
3D structure
- PDB id
- 7U2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 7U2I|1|1A|A|2388, 7U2I|1|1A|U|2390, 7U2I|1|1A|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7U2I_058 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.059
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7U2I|1|1A|G|2282
7U2I|1|1A|C|2283
7U2I|1|1A|C|2284
*
7U2I|1|1A|G|2384
7U2I|1|1A|C|2385
7U2I|1|1A|C|2386
7U2I|1|1A|U|2387
7U2I|1|1A|A|2388
7U2I|1|1A|G|2389
7U2I|1|1A|U|2390
7U2I|1|1A|G|2391
7U2I|1|1A|A|2392
7U2I|1|1A|A|2393
7U2I|1|1A|C|2394
7U2I|1|1A|C|2395
*
7U2I|1|1A|G|2421
7U2I|1|1A|A|2422
7U2I|1|1A|U|2423
7U2I|1|1A|C|2424
7U2I|1|1A|A|2425
7U2I|1|1A|A|2426
7U2I|1|1A|C|2427
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1P
- 50S ribosomal protein L15
- Chain 1y
- Transfer RNA; tRNA
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