J3_7U2J_024

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2J_024 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.412

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7U2J|1|1a|G|1002
7U2J|1|1a|G|1003
7U2J|1|1a|A|1004
7U2J|1|1a|A|1005
7U2J|1|1a|C|1006
*
7U2J|1|1a|G|1023
7U2J|1|1a|G|1024
7U2J|1|1a|U|1025
7U2J|1|1a|G|1026
7U2J|1|1a|C|1027
7U2J|1|1a|C|1028
*
7U2J|1|1a|G|1033
7U2J|1|1a|G|1034
7U2J|1|1a|A|1035
7U2J|1|1a|G|1036
7U2J|1|1a|C|1037
7U2J|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains