J3_7U2J_047

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

7U2J|1|2a|A|975, 7U2J|1|2a|G|976, 7U2J|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7U2J_047 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0857

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7U2J|1|2a|U|955
7U2J|1|2a|U|956
7U2J|1|2a|U|957
7U2J|1|2a|A|958
7U2J|1|2a|A|959
7U2J|1|2a|U|960
7U2J|1|2a|U|961
7U2J|1|2a|C|962
*
7U2J|1|2a|G|973
7U2J|1|2a|A|974
7U2J|1|2a|A|975
7U2J|1|2a|G|976
7U2J|1|2a|A|977
7U2J|1|2a|A|978
7U2J|1|2a|C|979
7U2J|1|2a|C|980
7U2J|1|2a|U|981
7U2J|1|2a|U|982
7U2J|1|2a|A|983
7U2J|1|2a|C|984
*
7U2J|1|2a|G|1221
7U2J|1|2a|G|1222
7U2J|1|2a|C|1223
7U2J|1|2a|G|1224
7U2J|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Transfer RNA; tRNA