J3_7UCJ_026
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAAU(PSU)U*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 7UCJ|1|9|G|1256, 7UCJ|1|9|A|1258
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UCJ_026 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1184
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7UCJ|1|9|C|1237
7UCJ|1|9|U|1238
7UCJ|1|9|U|1239
7UCJ|1|9|A|1240
7UCJ|1|9|A|1241
7UCJ|1|9|U|1242
7UCJ|1|9|PSU|1243
7UCJ|1|9|U|1244
*
7UCJ|1|9|G|1255
7UCJ|1|9|G|1256
7UCJ|1|9|G|1257
7UCJ|1|9|A|1258
7UCJ|1|9|A|1259
7UCJ|1|9|A|1260
7UCJ|1|9|C|1261
7UCJ|1|9|C|1262
7UCJ|1|9|U|1263
7UCJ|1|9|C|1264
7UCJ|1|9|A|1265
7UCJ|1|9|C|1266
*
7UCJ|1|9|G|1516
7UCJ|1|9|G|1517
7UCJ|1|9|C|1518
7UCJ|1|9|U|1519
7UCJ|1|9|G|1520
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain Dd
- 40S ribosomal protein S29
- Chain PP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
- Chain UU
- 40S ribosomal protein S20
Coloring options: