J3_7UCJ_035

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

7UCJ|1|5|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UCJ|1|5|C|451
7UCJ|1|5|A|452
7UCJ|1|5|G|453
7UCJ|1|5|U|454
7UCJ|1|5|C|455
*
7UCJ|1|5|G|701
7UCJ|1|5|U|702
7UCJ|1|5|G|703
7UCJ|1|5|C|704
7UCJ|1|5|G|705
*
7UCJ|1|5|C|1292
7UCJ|1|5|G|1293
7UCJ|1|5|A|1294
7UCJ|1|5|U|1295
7UCJ|1|5|G|1296

Current chains

Chain 5

28s rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

60S ribosomal protein L32

Chain f

60S ribosomal protein L35a

Chain r

60S ribosomal protein L28