J3_7UCK_013
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAA(B8W)C*GCGAC
- Length
- 26 nucleotides
- Bulged bases
- 7UCK|1|5|C|4116, 7UCK|1|5|U|4117, 7UCK|1|5|U|4118, 7UCK|1|5|G|4121
- QA status
- Modified nucleotides: B8W
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7UCK|1|5|G|4091
7UCK|1|5|G|4092
7UCK|1|5|G|4093
7UCK|1|5|G|4094
*
7UCK|1|5|C|4114
7UCK|1|5|G|4115
7UCK|1|5|C|4116
7UCK|1|5|U|4117
7UCK|1|5|U|4118
7UCK|1|5|C|4119
7UCK|1|5|U|4120
7UCK|1|5|G|4121
7UCK|1|5|G|4122
7UCK|1|5|C|4123
7UCK|1|5|G|4124
7UCK|1|5|C|4125
7UCK|1|5|C|4126
7UCK|1|5|A|4127
7UCK|1|5|A|4128
7UCK|1|5|B8W|4129
7UCK|1|5|C|4130
*
7UCK|1|5|G|4154
7UCK|1|5|C|4155
7UCK|1|5|G|4156
7UCK|1|5|A|4157
7UCK|1|5|C|4158
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain X
- 60S ribosomal protein L23a
- Chain Z
- 60S ribosomal protein L27
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34
- Chain p
- 60S ribosomal protein L37a
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