J3_7UCK_029
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UCK_029 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3498
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7UCK|1|9|U|1340
7UCK|1|9|C|1341
7UCK|1|9|U|1342
7UCK|1|9|U|1343
7UCK|1|9|A|1344
7UCK|1|9|G|1345
*
7UCK|1|9|C|1384
7UCK|1|9|G|1385
7UCK|1|9|A|1386
7UCK|1|9|G|1387
7UCK|1|9|A|1388
7UCK|1|9|C|1389
*
7UCK|1|9|G|1481
7UCK|1|9|C|1482
7UCK|1|9|A|1483
7UCK|1|9|A|1484
7UCK|1|9|U|1485
7UCK|1|9|A|1486
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S2
- Chain DD
- 40S ribosomal protein S3
- Chain Dd
- 40S ribosomal protein S29
- Chain QQ
- 40S ribosomal protein S16
- Chain RR
- 40S ribosomal protein S17
- Chain UU
- 40S ribosomal protein S20
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