J3_7UG6_013
3D structure
- PDB id
- 7UG6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGCUG*CACGUUCUAGCAUUCAAG*UGAU
- Length
- 27 nucleotides
- Bulged bases
- 7UG6|1|1|G|2549, 7UG6|1|1|U|2550, 7UG6|1|1|U|2551, 7UG6|1|1|A|2554, 7UG6|1|1|U|2558, 7UG6|1|1|U|2559, 7UG6|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UG6_013 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.2464
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
7UG6|1|1|A|2529
7UG6|1|1|G|2530
7UG6|1|1|C|2531
7UG6|1|1|U|2532
7UG6|1|1|G|2533
*
7UG6|1|1|C|2546
7UG6|1|1|A|2547
7UG6|1|1|C|2548
7UG6|1|1|G|2549
7UG6|1|1|U|2550
7UG6|1|1|U|2551
7UG6|1|1|C|2552
7UG6|1|1|U|2553
7UG6|1|1|A|2554
7UG6|1|1|G|2555
7UG6|1|1|C|2556
7UG6|1|1|A|2557
7UG6|1|1|U|2558
7UG6|1|1|U|2559
7UG6|1|1|C|2560
7UG6|1|1|A|2561
7UG6|1|1|A|2562
7UG6|1|1|G|2563
*
7UG6|1|1|U|2578
7UG6|1|1|G|2579
7UG6|1|1|A|2580
7UG6|1|1|U|2581
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 7
- 60S ribosomal protein L30
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
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