J3_7UG7_006

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UG7_006 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.0974

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7UG7|1|16|U|943
7UG7|1|16|G|944
7UG7|1|16|G|945
7UG7|1|16|A|946
*
7UG7|1|16|U|1235
7UG7|1|16|A|1236
7UG7|1|16|C|1237
*
7UG7|1|16|G|1337
7UG7|1|16|G|1338
7UG7|1|16|A|1339
7UG7|1|16|A|1340

Current chains

Chain 16

16S rRNA

Nearby chains

Chain Dt

Transfer RNA; tRNA

Chain SI

30S ribosomal protein S9

Chain SM

30S ribosomal protein S13