3D structure

PDB id
7UG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B
Experimental method
ELECTRON MICROSCOPY
Resolution
2.58 Å

Loop

Sequence
GCCGUAG*CGC*GGAAC
Length
15 nucleotides
Bulged bases
7UG7|1|5|U|14, 7UG7|1|5|A|108
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UG7_027 not in the Motif Atlas
Homologous match to J3_5J7L_049
Geometric discrepancy: 0.1005
The information below is about J3_5J7L_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89095.1
Basepair signature
cWW-F-F-F-tHS-F-cWW-F-cWW
Number of instances in this motif group
1

Unit IDs

7UG7|1|5|G|10
7UG7|1|5|C|11
7UG7|1|5|C|12
7UG7|1|5|G|13
7UG7|1|5|U|14
7UG7|1|5|A|15
7UG7|1|5|G|16
*
7UG7|1|5|C|68
7UG7|1|5|G|69
7UG7|1|5|C|70
*
7UG7|1|5|G|106
7UG7|1|5|G|107
7UG7|1|5|A|108
7UG7|1|5|A|109
7UG7|1|5|C|110

Current chains

Chain 5
5S rRNA

Nearby chains

Chain 23
Large subunit ribosomal RNA; LSU rRNA
Chain LR
50S ribosomal protein L18
Chain LY
50S ribosomal protein L25
Chain La
50S ribosomal protein L27

Coloring options:


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