J3_7UNR_006

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAG*CGG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UNR_006 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.1619

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7UNR|1|A|C|1285
7UNR|1|A|G|1286
7UNR|1|A|A|1287
7UNR|1|A|A|1288
7UNR|1|A|A|1289
7UNR|1|A|G|1290
*
7UNR|1|A|C|1615
7UNR|1|A|G|1616
7UNR|1|A|G|1617
*
7UNR|1|A|C|1629
7UNR|1|A|A|1630
7UNR|1|A|A|1631
7UNR|1|A|G|1632

Current chains

Chain A

23S Ribosomal RNA

Nearby chains