3D structure

PDB id
7UNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
7UNW|1|a|A|969, 7UNW|1|a|G|970
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UNW_019 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.1098
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7UNW|1|a|U|949
7UNW|1|a|U|950
7UNW|1|a|U|951
7UNW|1|a|A|952
7UNW|1|a|A|953
7UNW|1|a|U|954
7UNW|1|a|U|955
7UNW|1|a|C|956
*
7UNW|1|a|G|967
7UNW|1|a|A|968
7UNW|1|a|A|969
7UNW|1|a|G|970
7UNW|1|a|A|971
7UNW|1|a|A|972
7UNW|1|a|C|973
7UNW|1|a|C|974
7UNW|1|a|U|975
7UNW|1|a|U|976
7UNW|1|a|A|977
7UNW|1|a|C|978
*
7UNW|1|a|G|1215
7UNW|1|a|G|1216
7UNW|1|a|C|1217
7UNW|1|a|U|1218
7UNW|1|a|A|1219

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain j
30S ribosomal protein S10
Chain m
30S ribosomal protein S13
Chain n
30S ribosomal protein S14
Chain s
30S ribosomal protein S19

Coloring options:


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