J3_7UQB_005

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UAG*CGUA(OMG)C*GUCGA

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UQB|1|1|U|829
7UQB|1|1|A|830
7UQB|1|1|G|831
*
7UQB|1|1|C|863
7UQB|1|1|G|864
7UQB|1|1|U|865
7UQB|1|1|A|866
7UQB|1|1|OMG|867
7UQB|1|1|C|868
*
7UQB|1|1|G|891
7UQB|1|1|U|892
7UQB|1|1|C|893
7UQB|1|1|G|894
7UQB|1|1|A|895

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L19-A

Chain g

60S ribosomal protein L34-A

Chain j

60S ribosomal protein L37-A