J3_7UQB_017
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 7UQB|1|1|U|117, 7UQB|1|1|G|120, 7UQB|1|1|A|121, 7UQB|1|1|U|147, 7UQB|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7UQB|1|1|C|113
7UQB|1|1|A|114
7UQB|1|1|A|115
7UQB|1|1|A|116
7UQB|1|1|U|117
7UQB|1|1|U|118
7UQB|1|1|U|119
7UQB|1|1|G|120
7UQB|1|1|A|121
7UQB|1|1|A|122
7UQB|1|1|A|123
7UQB|1|1|U|124
*
7UQB|1|1|A|144
7UQB|1|1|G|145
7UQB|1|1|U|146
7UQB|1|1|U|147
7UQB|1|1|G|148
7UQB|1|1|U|149
7UQB|1|1|A|150
7UQB|1|1|A|151
7UQB|1|1|U|152
7UQB|1|1|U|153
7UQB|1|1|U|154
7UQB|1|1|G|155
7UQB|1|1|G|156
7UQB|1|1|A|157
7UQB|1|1|G|158
*
7UQB|1|1|C|263
7UQB|1|1|G|264
7UQB|1|1|A|265
7UQB|1|1|A|266
7UQB|1|1|G|267
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain n
- Pescadillo homolog
Coloring options: