J3_7UQB_020
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 7UQB|1|1|A|398, 7UQB|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UQB_020 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.1127
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7UQB|1|1|A|369
7UQB|1|1|U|370
7UQB|1|1|G|371
7UQB|1|1|A|372
7UQB|1|1|A|373
7UQB|1|1|A|374
7UQB|1|1|A|375
7UQB|1|1|G|376
7UQB|1|1|A|377
7UQB|1|1|A|378
7UQB|1|1|C|379
*
7UQB|1|1|G|390
7UQB|1|1|A|391
7UQB|1|1|G|392
7UQB|1|1|U|393
7UQB|1|1|G|394
7UQB|1|1|A|395
7UQB|1|1|A|396
7UQB|1|1|A|397
7UQB|1|1|A|398
7UQB|1|1|A|399
7UQB|1|1|G|400
7UQB|1|1|U|401
7UQB|1|1|A|402
7UQB|1|1|C|403
7UQB|1|1|G|404
*
7UQB|1|2|C|19
7UQB|1|2|U|20
Current chains
- Chain 1
- 25S rRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain 4
- Probable metalloprotease ARX1
- Chain 9
- Ribosome biogenesis protein ALB1
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain l
- 60S ribosomal protein L39
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