J3_7UQB_027
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- AUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUU
- Length
- 35 nucleotides
- Bulged bases
- 7UQB|1|1|U|3171, 7UQB|1|1|A|3172, 7UQB|1|1|G|3173, 7UQB|1|1|A|3215, 7UQB|1|1|G|3216, 7UQB|1|1|G|3219, 7UQB|1|1|A|3268, 7UQB|1|1|U|3270, 7UQB|1|1|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7UQB|1|1|A|3168
7UQB|1|1|U|3169
7UQB|1|1|A|3170
7UQB|1|1|U|3171
7UQB|1|1|A|3172
7UQB|1|1|G|3173
7UQB|1|1|A|3174
7UQB|1|1|U|3175
7UQB|1|1|G|3176
*
7UQB|1|1|C|3212
7UQB|1|1|A|3213
7UQB|1|1|U|3214
7UQB|1|1|A|3215
7UQB|1|1|G|3216
7UQB|1|1|C|3217
7UQB|1|1|A|3218
7UQB|1|1|G|3219
7UQB|1|1|G|3220
*
7UQB|1|1|C|3265
7UQB|1|1|G|3266
7UQB|1|1|A|3267
7UQB|1|1|A|3268
7UQB|1|1|U|3269
7UQB|1|1|U|3270
7UQB|1|1|G|3271
7UQB|1|1|C|3272
7UQB|1|1|A|3273
7UQB|1|1|A|3274
7UQB|1|1|U|3275
7UQB|1|1|G|3276
7UQB|1|1|U|3277
7UQB|1|1|C|3278
7UQB|1|1|A|3279
7UQB|1|1|U|3280
7UQB|1|1|U|3281
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 9
- Ribosome biogenesis protein ALB1
- Chain E
- 60S ribosomal protein L6-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain P
- 60S ribosomal protein L17-A
- Chain f
- 60S ribosomal protein L33-A
- Chain z
- UPF0642 protein YBL028C
Coloring options: