3D structure

PDB id
7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
AGAUGG*CGUUUCAAAG*CACCAU
Length
22 nucleotides
Bulged bases
7UQZ|1|1|A|1558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7UQZ|1|1|A|1537
7UQZ|1|1|G|1538
7UQZ|1|1|A|1539
7UQZ|1|1|U|1540
7UQZ|1|1|G|1541
7UQZ|1|1|G|1542
*
7UQZ|1|1|C|1551
7UQZ|1|1|G|1552
7UQZ|1|1|U|1553
7UQZ|1|1|U|1554
7UQZ|1|1|U|1555
7UQZ|1|1|C|1556
7UQZ|1|1|A|1557
7UQZ|1|1|A|1558
7UQZ|1|1|A|1559
7UQZ|1|1|G|1560
*
7UQZ|1|1|C|1579
7UQZ|1|1|A|1580
7UQZ|1|1|C|1581
7UQZ|1|1|C|1582
7UQZ|1|1|A|1583
7UQZ|1|1|U|1584

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 2
5.8S ribosomal RNA; 5.8S rRNA
Chain A
60S ribosomal protein L2-A
Chain G
60S ribosomal protein L8-A
Chain N
60S ribosomal protein L15-A
Chain X
60S ribosomal protein L25
Chain j
60S ribosomal protein L37-A
Chain q
Ribosome biogenesis protein NOP53

Coloring options:

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