J3_7UVW_004

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CAAG*CCGAAAC*GUG

Length

14 nucleotides

Bulged bases

7UVW|1|A|G|1605, 7UVW|1|A|A|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UVW_004 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.3567

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7UVW|1|A|C|1301
7UVW|1|A|A|1302
7UVW|1|A|A|1303
7UVW|1|A|G|1304
*
7UVW|1|A|C|1603
7UVW|1|A|C|1604
7UVW|1|A|G|1605
7UVW|1|A|A|1606
7UVW|1|A|A|1607
7UVW|1|A|A|1608
7UVW|1|A|C|1609
*
7UVW|1|A|G|1618
7UVW|1|A|U|1619
7UVW|1|A|G|1620

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34