J3_7V08_005

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

UAG*CGUA(OMG)C*GUCGA

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7V08|1|1|U|829
7V08|1|1|A|830
7V08|1|1|G|831
*
7V08|1|1|C|863
7V08|1|1|G|864
7V08|1|1|U|865
7V08|1|1|A|866
7V08|1|1|OMG|867
7V08|1|1|C|868
*
7V08|1|1|G|891
7V08|1|1|U|892
7V08|1|1|C|893
7V08|1|1|G|894
7V08|1|1|A|895

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L19-A

Chain g

60S ribosomal protein L34-A

Chain j

60S ribosomal protein L37-A