J3_7V08_015

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

7V08|1|1|A|3316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7V08|1|1|C|3298
7V08|1|1|A|3299
7V08|1|1|U|3300
*
7V08|1|1|A|3314
7V08|1|1|G|3315
7V08|1|1|A|3316
7V08|1|1|U|3317
7V08|1|1|G|3318
*
7V08|1|1|C|3388
7V08|1|1|U|3389
7V08|1|1|G|3390

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain d

60S ribosomal protein L31-A