J3_7V08_020
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 7V08|1|1|A|398, 7V08|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7V08_020 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.112
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7V08|1|1|A|369
7V08|1|1|U|370
7V08|1|1|G|371
7V08|1|1|A|372
7V08|1|1|A|373
7V08|1|1|A|374
7V08|1|1|A|375
7V08|1|1|G|376
7V08|1|1|A|377
7V08|1|1|A|378
7V08|1|1|C|379
*
7V08|1|1|G|390
7V08|1|1|A|391
7V08|1|1|G|392
7V08|1|1|U|393
7V08|1|1|G|394
7V08|1|1|A|395
7V08|1|1|A|396
7V08|1|1|A|397
7V08|1|1|A|398
7V08|1|1|A|399
7V08|1|1|G|400
7V08|1|1|U|401
7V08|1|1|A|402
7V08|1|1|C|403
7V08|1|1|G|404
*
7V08|1|2|C|19
7V08|1|2|U|20
Current chains
- Chain 1
- 25S rRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain 4
- Probable metalloprotease ARX1
- Chain 9
- Ribosome biogenesis protein ALB1
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain l
- 60S ribosomal protein L39
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