J3_7V2M_002
3D structure
- PDB id
- 7V2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K1k4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGG*CUAG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7V2M_002 not in the Motif Atlas
- Geometric match to J3_1KUQ_001
- Geometric discrepancy: 0.1531
- The information below is about J3_1KUQ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7V2M|1|A|C|570
7V2M|1|A|G|571
7V2M|1|A|G|572
*
7V2M|1|A|C|635
7V2M|1|A|U|636
7V2M|1|A|A|637
7V2M|1|A|G|638
*
7V2M|1|A|C|738
7V2M|1|A|G|739
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
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