3D structure

PDB id
7V2M (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophilus 30S ribosome with KsgA, class K1k4
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7V2M_005 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.1202
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85722.1
Basepair signature
cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
Number of instances in this motif group
5

Unit IDs

7V2M|1|A|C|914
7V2M|1|A|A|915
7V2M|1|A|A|916
7V2M|1|A|G|917
*
7V2M|1|A|C|1326
7V2M|1|A|U|1327
7V2M|1|A|A|1328
7V2M|1|A|G|1329
7V2M|1|A|U|1330
7V2M|1|A|A|1331
7V2M|1|A|A|1332
*
7V2M|1|A|U|1355
7V2M|1|A|G|1356
7V2M|1|A|A|1357
7V2M|1|A|A|1358
7V2M|1|A|U|1359
7V2M|1|A|A|1360
7V2M|1|A|C|1361
7V2M|1|A|G|1362

Current chains

Chain A
16s ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9

Coloring options:


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