J3_7V2O_001
3D structure
- PDB id
- 7V2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GC*GGAAUCU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7V2O_001 not in the Motif Atlas
- Homologous match to J3_5J7L_001
- Geometric discrepancy: 0.1375
- The information below is about J3_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7V2O|1|A|G|47
7V2O|1|A|C|48
*
7V2O|1|A|G|357
7V2O|1|A|G|358
7V2O|1|A|A|359
7V2O|1|A|A|360
7V2O|1|A|U|361
7V2O|1|A|C|362
7V2O|1|A|U|363
*
7V2O|1|A|A|389
7V2O|1|A|G|390
7V2O|1|A|C|391
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
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