J3_7WTL_001

3D structure

PDB id

7WTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7WTL|1|C2|A|47, 7WTL|1|C2|C|433, 7WTL|1|C2|A|437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTL|1|C2|A|41
7WTL|1|C2|G|42
7WTL|1|C2|A|43
7WTL|1|C2|U|44
7WTL|1|C2|U|45
7WTL|1|C2|A|46
7WTL|1|C2|A|47
7WTL|1|C2|G|48
*
7WTL|1|C2|C|431
7WTL|1|C2|G|432
7WTL|1|C2|C|433
7WTL|1|C2|G|434
7WTL|1|C2|C|435
7WTL|1|C2|A|436
7WTL|1|C2|A|437
7WTL|1|C2|A|438
7WTL|1|C2|U|439
*
7WTL|1|C2|A|464
7WTL|1|C2|G|465
7WTL|1|C2|U|466

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A