J3_7WTN_007

3D structure

PDB id

7WTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

7WTN|1|C2|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTN|1|C2|A|213
7WTN|1|C2|G|214
7WTN|1|C2|A|215
7WTN|1|C2|U|216
7WTN|1|C2|A|217
7WTN|1|C2|A|218
7WTN|1|C2|A|219
7WTN|1|C2|A|220
7WTN|1|C2|A|221
7WTN|1|C2|A|222
7WTN|1|C2|U|223
7WTN|1|C2|C|224
7WTN|1|C2|A|225
7WTN|1|C2|A|226
7WTN|1|C2|U|227
7WTN|1|C2|G|228
*
7WTN|1|C2|C|237
7WTN|1|C2|U|238
7WTN|1|C2|C|239
7WTN|1|C2|U|240
7WTN|1|C2|U|241
7WTN|1|C2|U|242
7WTN|1|C2|G|243
*
7WTN|1|C2|C|250
7WTN|1|C2|A|251
7WTN|1|C2|U|252

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A