J3_7WTO_006

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

7WTO|1|C2|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTO|1|C2|A|213
7WTO|1|C2|G|214
7WTO|1|C2|A|215
7WTO|1|C2|U|216
7WTO|1|C2|A|217
7WTO|1|C2|A|218
7WTO|1|C2|A|219
7WTO|1|C2|A|220
7WTO|1|C2|A|221
7WTO|1|C2|A|222
7WTO|1|C2|U|223
7WTO|1|C2|C|224
7WTO|1|C2|A|225
7WTO|1|C2|A|226
7WTO|1|C2|U|227
7WTO|1|C2|G|228
*
7WTO|1|C2|C|237
7WTO|1|C2|U|238
7WTO|1|C2|C|239
7WTO|1|C2|U|240
7WTO|1|C2|U|241
7WTO|1|C2|U|242
7WTO|1|C2|G|243
*
7WTO|1|C2|C|250
7WTO|1|C2|A|251
7WTO|1|C2|U|252

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A