J3_7WTP_007

3D structure

PDB id

7WTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

7WTP|1|C2|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTP|1|C2|A|213
7WTP|1|C2|G|214
7WTP|1|C2|A|215
7WTP|1|C2|U|216
7WTP|1|C2|A|217
7WTP|1|C2|A|218
7WTP|1|C2|A|219
7WTP|1|C2|A|220
7WTP|1|C2|A|221
7WTP|1|C2|A|222
7WTP|1|C2|U|223
7WTP|1|C2|C|224
7WTP|1|C2|A|225
7WTP|1|C2|A|226
7WTP|1|C2|U|227
7WTP|1|C2|G|228
*
7WTP|1|C2|C|237
7WTP|1|C2|U|238
7WTP|1|C2|C|239
7WTP|1|C2|U|240
7WTP|1|C2|U|241
7WTP|1|C2|U|242
7WTP|1|C2|G|243
*
7WTP|1|C2|C|250
7WTP|1|C2|A|251
7WTP|1|C2|U|252

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A