J3_7WTQ_007

3D structure

PDB id

7WTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

7WTQ|1|C2|U|227, 7WTQ|1|C2|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTQ|1|C2|A|213
7WTQ|1|C2|G|214
7WTQ|1|C2|A|215
7WTQ|1|C2|U|216
7WTQ|1|C2|A|217
7WTQ|1|C2|A|218
7WTQ|1|C2|A|219
7WTQ|1|C2|A|220
7WTQ|1|C2|A|221
7WTQ|1|C2|A|222
7WTQ|1|C2|U|223
7WTQ|1|C2|C|224
7WTQ|1|C2|A|225
7WTQ|1|C2|A|226
7WTQ|1|C2|U|227
7WTQ|1|C2|G|228
*
7WTQ|1|C2|C|237
7WTQ|1|C2|U|238
7WTQ|1|C2|C|239
7WTQ|1|C2|U|240
7WTQ|1|C2|U|241
7WTQ|1|C2|U|242
7WTQ|1|C2|G|243
*
7WTQ|1|C2|C|250
7WTQ|1|C2|A|251
7WTQ|1|C2|U|252

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A