J3_7WTT_010

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7WTT|1|2|A|1454, 7WTT|1|2|U|1477

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTT|1|2|C|1391
7WTT|1|2|U|1392
7WTT|1|2|G|1393
7WTT|1|2|G|1394
7WTT|1|2|C|1395
*
7WTT|1|2|G|1450
7WTT|1|2|G|1451
7WTT|1|2|A|1452
7WTT|1|2|C|1453
7WTT|1|2|A|1454
7WTT|1|2|A|1455
7WTT|1|2|G|1456
*
7WTT|1|2|C|1470
7WTT|1|2|C|1471
7WTT|1|2|C|1472
7WTT|1|2|G|1473
7WTT|1|2|A|1474
7WTT|1|2|G|1475
7WTT|1|2|A|1476
7WTT|1|2|U|1477
7WTT|1|2|U|1478
7WTT|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein

Chain R

40S ribosomal protein S17

Chain z

Ribosome biogenesis protein SLX9 homolog