J3_7WTX_007

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAC*GGGUGG*CUUAG

Length

16 nucleotides

Bulged bases

7WTX|1|2|G|1322, 7WTX|1|2|A|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTX|1|2|C|1273
7WTX|1|2|G|1274
7WTX|1|2|G|1275
7WTX|1|2|A|1276
7WTX|1|2|C|1277
*
7WTX|1|2|G|1320
7WTX|1|2|G|1321
7WTX|1|2|G|1322
7WTX|1|2|U|1323
7WTX|1|2|G|1324
7WTX|1|2|G|1325
*
7WTX|1|2|C|1503
7WTX|1|2|U|1504
7WTX|1|2|U|1505
7WTX|1|2|A|1506
7WTX|1|2|G|1507

Current chains

Chain 2

18S rRNA

Nearby chains

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain u

Pre-rRNA-processing protein TSR1 homolog

Chain w

Bystin