J3_7WTZ_007

3D structure

PDB id

7WTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAAUUUG*CGGGAAACCUCAC*GGCUG

Length

27 nucleotides

Bulged bases

7WTZ|1|2|G|1256, 7WTZ|1|2|A|1258, 7WTZ|1|2|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTZ|1|2|C|1237
7WTZ|1|2|U|1238
7WTZ|1|2|U|1239
7WTZ|1|2|A|1240
7WTZ|1|2|A|1241
7WTZ|1|2|U|1242
7WTZ|1|2|U|1243
7WTZ|1|2|U|1244
7WTZ|1|2|G|1245
*
7WTZ|1|2|C|1254
7WTZ|1|2|G|1255
7WTZ|1|2|G|1256
7WTZ|1|2|G|1257
7WTZ|1|2|A|1258
7WTZ|1|2|A|1259
7WTZ|1|2|A|1260
7WTZ|1|2|C|1261
7WTZ|1|2|C|1262
7WTZ|1|2|U|1263
7WTZ|1|2|C|1264
7WTZ|1|2|A|1265
7WTZ|1|2|C|1266
*
7WTZ|1|2|G|1516
7WTZ|1|2|G|1517
7WTZ|1|2|C|1518
7WTZ|1|2|U|1519
7WTZ|1|2|G|1520

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18

Chain u

Pre-rRNA-processing protein TSR1 homolog

Chain w

Bystin