J3_7XAM_020

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XAM_020 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2494

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

7XAM|1|A|U|1646
7XAM|1|A|G|1647
7XAM|1|A|A|1648
7XAM|1|A|C|1649
7XAM|1|A|G|1650
*
7XAM|1|A|C|1784
7XAM|1|A|C|1785
*
7XAM|1|A|G|1788
7XAM|1|A|A|1789
7XAM|1|A|A|1790
7XAM|1|A|A|1791
7XAM|1|A|A|1792
7XAM|1|A|G|1793

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2