J3_7XNX_003

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

7XNX|1|L1|C|962, 7XNX|1|L1|C|967, 7XNX|1|L1|C|968, 7XNX|1|L1|C|969, 7XNX|1|L1|U|971, 7XNX|1|L1|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|C|712
7XNX|1|L1|C|713
*
7XNX|1|L1|G|955
7XNX|1|L1|A|956
7XNX|1|L1|G|957
7XNX|1|L1|G|958
7XNX|1|L1|G|959
7XNX|1|L1|A|960
7XNX|1|L1|G|961
7XNX|1|L1|C|962
7XNX|1|L1|G|963
7XNX|1|L1|A|964
7XNX|1|L1|G|965
7XNX|1|L1|A|966
7XNX|1|L1|C|967
7XNX|1|L1|C|968
7XNX|1|L1|C|969
7XNX|1|L1|G|970
7XNX|1|L1|U|971
7XNX|1|L1|C|972
7XNX|1|L1|G|973
7XNX|1|L1|C|974
7XNX|1|L1|C|975
7XNX|1|L1|G|976
*
7XNX|1|L1|C|1278
7XNX|1|L1|A|1279
7XNX|1|L1|C|1280
7XNX|1|L1|G|1281
7XNX|1|L1|G|1282
7XNX|1|L1|G|1283
7XNX|1|L1|G|1284

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32