J3_7XNX_033

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

7XNX|1|L1|C|704, 7XNX|1|L1|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|C|451
7XNX|1|L1|A|452
7XNX|1|L1|G|453
7XNX|1|L1|U|454
7XNX|1|L1|C|455
*
7XNX|1|L1|G|701
7XNX|1|L1|U|702
7XNX|1|L1|G|703
7XNX|1|L1|C|704
7XNX|1|L1|G|705
*
7XNX|1|L1|C|1292
7XNX|1|L1|G|1293
7XNX|1|L1|A|1294
7XNX|1|L1|C|1295
7XNX|1|L1|G|1296

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a

Chain Lr

60S ribosomal protein L28