J3_7XNX_036
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 7XNX|1|L1|C|2470, 7XNX|1|L1|A|2472, 7XNX|1|L1|G|2475, 7XNX|1|L1|G|2503, 7XNX|1|L1|C|2504
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7XNX|1|L1|A|2451
7XNX|1|L1|G|2452
7XNX|1|L1|A|2453
7XNX|1|L1|U|2454
7XNX|1|L1|G|2455
7XNX|1|L1|G|2456
*
7XNX|1|L1|C|2465
7XNX|1|L1|G|2466
7XNX|1|L1|U|2467
7XNX|1|L1|U|2468
7XNX|1|L1|C|2469
7XNX|1|L1|C|2470
7XNX|1|L1|G|2471
7XNX|1|L1|A|2472
7XNX|1|L1|A|2473
7XNX|1|L1|G|2474
7XNX|1|L1|G|2475
7XNX|1|L1|G|2476
*
7XNX|1|L1|C|2501
7XNX|1|L1|G|2502
7XNX|1|L1|G|2503
7XNX|1|L1|C|2504
7XNX|1|L1|C|2505
7XNX|1|L1|G|2506
7XNX|1|L1|A|2507
7XNX|1|L1|PSU|2508
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain L3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lj
- 60S ribosomal protein L37
Coloring options: