J3_7XNX_040

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

7XNX|1|L1|U|4882, 7XNX|1|L1|A|4938, 7XNX|1|L1|C|4940, 7XNX|1|L1|A|4943, 7XNX|1|L1|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|G|4751
7XNX|1|L1|U|4752
7XNX|1|L1|U|4753
7XNX|1|L1|G|4754
*
7XNX|1|L1|C|4879
7XNX|1|L1|C|4880
7XNX|1|L1|U|4881
7XNX|1|L1|U|4882
7XNX|1|L1|C|4883
*
7XNX|1|L1|G|4936
7XNX|1|L1|C|4937
7XNX|1|L1|A|4938
7XNX|1|L1|C|4939
7XNX|1|L1|C|4940
7XNX|1|L1|G|4941
7XNX|1|L1|C|4942
7XNX|1|L1|A|4943
7XNX|1|L1|C|4944
7XNX|1|L1|G|4945
7XNX|1|L1|U|4946
7XNX|1|L1|U|4947
7XNX|1|L1|C|4948

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a