J3_7Y41_002

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

7Y41|1|A|U|801, 7Y41|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Y41_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0921

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7Y41|1|A|U|798
7Y41|1|A|G|799
7Y41|1|A|A|800
7Y41|1|A|U|801
7Y41|1|A|C|802
7Y41|1|A|U|803
7Y41|1|A|A|804
*
7Y41|1|A|U|888
7Y41|1|A|A|889
7Y41|1|A|G|890
*
7Y41|1|A|C|906
7Y41|1|A|A|907
7Y41|1|A|A|908
7Y41|1|A|A|909

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34