J3_7Y41_020

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Y41_020 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.261

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

7Y41|1|A|U|1646
7Y41|1|A|G|1647
7Y41|1|A|A|1648
7Y41|1|A|C|1649
7Y41|1|A|G|1650
*
7Y41|1|A|C|1784
7Y41|1|A|C|1785
*
7Y41|1|A|G|1788
7Y41|1|A|A|1789
7Y41|1|A|A|1790
7Y41|1|A|A|1791
7Y41|1|A|A|1792
7Y41|1|A|G|1793

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2