J3_7Y7F_031

3D structure

PDB id

7Y7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7Y7F|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Y7F_031 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0504

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7Y7F|1|a|G|297
7Y7F|1|a|G|298
7Y7F|1|a|A|299
7Y7F|1|a|A|300
7Y7F|1|a|G|301
*
7Y7F|1|a|C|316
7Y7F|1|a|G|317
7Y7F|1|a|C|318
7Y7F|1|a|G|319
7Y7F|1|a|A|320
7Y7F|1|a|U|321
7Y7F|1|a|A|322
7Y7F|1|a|C|323
7Y7F|1|a|A|324
7Y7F|1|a|G|325
*
7Y7F|1|a|C|337
7Y7F|1|a|G|338
7Y7F|1|a|U|339
7Y7F|1|a|A|340
7Y7F|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24