3D structure

PDB id
7YLA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 50S-HflX complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.52 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
7YLA|1|I|U|686, 7YLA|1|I|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7YLA_003 not in the Motif Atlas
Homologous match to J3_5J7L_038
Geometric discrepancy: 0.0571
The information below is about J3_5J7L_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

7YLA|1|I|U|683
7YLA|1|I|G|684
7YLA|1|I|A|685
7YLA|1|I|U|686
7YLA|1|I|C|687
7YLA|1|I|U|688
7YLA|1|I|A|689
*
7YLA|1|I|U|773
7YLA|1|I|G|774
7YLA|1|I|G|775
*
7YLA|1|I|C|791
7YLA|1|I|A|792
7YLA|1|I|A|793
7YLA|1|I|A|794

Current chains

Chain I
Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain K
50S ribosomal protein L2
Chain k
50S ribosomal protein L34

Coloring options:


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