J3_7YLA_007

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7YLA|1|I|C|1607, 7YLA|1|I|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7YLA_007 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1579

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7YLA|1|I|C|1306
7YLA|1|I|A|1307
7YLA|1|I|A|1308
7YLA|1|I|G|1309
*
7YLA|1|I|C|1605
7YLA|1|I|C|1606
7YLA|1|I|C|1607
7YLA|1|I|A|1608
7YLA|1|I|A|1609
7YLA|1|I|A|1610
7YLA|1|I|C|1611
*
7YLA|1|I|G|1620
7YLA|1|I|U|1621
7YLA|1|I|G|1622

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain k

50S ribosomal protein L34