J3_7YLA_008

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7YLA_008 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1056

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

7YLA|1|I|U|1344
7YLA|1|I|C|1345
7YLA|1|I|G|1346
7YLA|1|I|A|1347
7YLA|1|I|C|1348
7YLA|1|I|C|1349
*
7YLA|1|I|G|1382
7YLA|1|I|A|1383
7YLA|1|I|A|1384
7YLA|1|I|A|1385
*
7YLA|1|I|U|1402
7YLA|1|I|A|1403

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain b

50S ribosomal protein L23