J3_7YLA_011

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

7YLA|1|I|A|2518, 7YLA|1|I|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7YLA_011 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0834

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7YLA|1|I|C|2517
7YLA|1|I|A|2518
7YLA|1|I|U|2519
7YLA|1|I|C|2520
*
7YLA|1|I|G|2545
7YLA|1|I|U|2546
7YLA|1|I|A|2547
*
7YLA|1|I|U|2561
7YLA|1|I|U|2562
7YLA|1|I|U|2563
7YLA|1|I|A|2564
7YLA|1|I|A|2565
7YLA|1|I|A|2566
7YLA|1|I|G|2567

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain S

50S ribosomal protein L14