J3_7ZAI_010

3D structure

PDB id

7ZAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

7ZAI|1|2|U|1214, 7ZAI|1|2|U|1276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAI|1|2|C|1211
7ZAI|1|2|A|1212
7ZAI|1|2|A|1213
7ZAI|1|2|U|1214
7ZAI|1|2|G|1215
*
7ZAI|1|2|C|1270
7ZAI|1|2|U|1271
7ZAI|1|2|C|1272
7ZAI|1|2|A|1273
7ZAI|1|2|G|1274
7ZAI|1|2|U|1275
7ZAI|1|2|U|1276
7ZAI|1|2|C|1277
*
7ZAI|1|2|G|1308
7ZAI|1|2|C|1309
7ZAI|1|2|U|1310
7ZAI|1|2|G|1311

Current chains

Chain 2

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain O

30S ribosomal protein S13

Chain U

30S ribosomal protein S19e