J3_7ZAI_014

3D structure

PDB id

7ZAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CUAGUACC*GCGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAI|1|2|C|908
7ZAI|1|2|A|909
7ZAI|1|2|A|910
7ZAI|1|2|G|911
*
7ZAI|1|2|C|1318
7ZAI|1|2|U|1319
7ZAI|1|2|A|1320
7ZAI|1|2|G|1321
7ZAI|1|2|U|1322
7ZAI|1|2|A|1323
7ZAI|1|2|C|1324
7ZAI|1|2|C|1325
*
7ZAI|1|2|G|1345
7ZAI|1|2|C|1346
7ZAI|1|2|G|1347
7ZAI|1|2|A|1348
7ZAI|1|2|A|1349
7ZAI|1|2|U|1350
7ZAI|1|2|A|1351
7ZAI|1|2|C|1352
7ZAI|1|2|G|1353

Current chains

Chain 2

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain K

30S ribosomal protein S9

Chain X

30S ribosomal protein S28e