J3_7ZHG_004
3D structure
- PDB id
- 7ZHG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- CUAGG*C(4AC)G(OMU)AGG*C(4AC)GUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 7ZHG|1|2|U|842
- QA status
- Modified nucleotides: 4AC, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZHG|1|2|C|793
7ZHG|1|2|U|794
7ZHG|1|2|A|795
7ZHG|1|2|G|796
7ZHG|1|2|G|797
*
7ZHG|1|2|C|827
7ZHG|1|2|4AC|828
7ZHG|1|2|G|829
7ZHG|1|2|OMU|830
7ZHG|1|2|A|831
7ZHG|1|2|G|832
7ZHG|1|2|G|833
*
7ZHG|1|2|C|838
7ZHG|1|2|4AC|839
7ZHG|1|2|G|840
7ZHG|1|2|U|841
7ZHG|1|2|U|842
7ZHG|1|2|A|843
7ZHG|1|2|A|844
7ZHG|1|2|G|845
Current chains
- Chain 2
- rRNA 16S
Nearby chains
- Chain 5
- mRNA
- Chain B
- 30S ribosomal protein S2
- Chain C
- Zn-ribbon RNA-binding protein involved in translation
- Chain F
- 30S ribosomal protein S5
- Chain I
- 30S ribosomal protein S8
- Chain N
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S15
- Chain W
- 30S ribosomal protein S27e
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