J3_7ZHG_010

3D structure

PDB id

7ZHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

7ZHG|1|2|U|1214, 7ZHG|1|2|U|1276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZHG|1|2|C|1211
7ZHG|1|2|A|1212
7ZHG|1|2|A|1213
7ZHG|1|2|U|1214
7ZHG|1|2|G|1215
*
7ZHG|1|2|C|1270
7ZHG|1|2|U|1271
7ZHG|1|2|C|1272
7ZHG|1|2|A|1273
7ZHG|1|2|G|1274
7ZHG|1|2|U|1275
7ZHG|1|2|U|1276
7ZHG|1|2|C|1277
*
7ZHG|1|2|G|1308
7ZHG|1|2|C|1309
7ZHG|1|2|U|1310
7ZHG|1|2|G|1311

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain H

30S ribosomal protein S7

Chain O

30S ribosomal protein S13

Chain U

30S ribosomal protein S19e